Types of Japanese restaurants
Sushi
If you don't mind seeing all the dead fish, sushi can sometimes actually be a possible option for vegans and vegetarians. The fishless options are the cheapest but sweetest. Order Kappa-maki (cucumber roll), O-shinko-maki (pickled vegetables, usually yellow Japanese radish), Natto-maki (fermented soybeans roll), Kanpiyo-maki (pickled gourd roll) and some places also have Inari (sweet rice wrapped in thin deep-fried tofu), Ume-maki (sour pickled plum, sometimes with cucumber), Horenso-maki (spinach roll), and other sushi made with different kinds of seaweed on rice. Some of these come with fish flakes sprinkled on top, so ask for 'katsuo-bushi nashi' to hold the fish flakes. Tamago (sweet egg on rice) usually contains fish stock. Some sushi restaurants also serve konyakku sashimi (thin slices of gelatinous yam paste), salads and seaweed soup which might also be ok. Sushi restaurants often have pictures on the menu. You'll find more veg options at a large sushi restaurant of course. Even at kaiten-zushi (conveyer belt sushi) restaurants, you can order things made fresh if nothing veg comes past.
Tempura
Tempura is deep-fried battered seafood and vegetables. Most tempura places will have yasai tempura (vegetables only) on the menu. Eggs are used in the batter so it's not an option for vegans. The vegetables are also of course fried in the same oil as seafood. Skip the miso soup as it probably contains fish stock. The tempura sauce might too, so ask for it "shio de" (with salt) and use salt or soy sauce instead. Don't put the sauce or salt on the tempura, but dip the tempura in it. Common vegetables in tempura are nasu (eggplant/aubergine), Shiitake or other mushrooms, imo (sweet potato), kabotcha (pumpkin), renkon (lotus root), and onion. You'd be better to order a la carte because the sets usually contain miso soup and a kind of egg pudding made with fish stock. Tenya is a cheap fast-food-style tempura chain easily recognised by its blue and yellow signs.
Search Japan Veg Guide for tempura restaurants.
Okonomiyaki
Okonomiyaki is like a big fat pancake with cabbage and seafood or meat. Most places should be able to make it sans meat and seafood. Egg is used in the batter so it's not suitable for vegans. Usually, you cook it yourself on a hot-plate or it is cooked in front of you. For vegetarians, it's basically just cabbage and batter, but depending on the style of the restaurant, you can ask for other ingredients like soba noodles, kimchee, mushrooms, etc. One problem is that apparently some okonomiyaki restaurants use lard on the hotplate so try to find one which doesn't or be so bold as to ask them to use vegetable oil instead. Another problem is that okonomiyaki sauce sometimes contains fish, so you could ask for it without sauce. Also, they sprinkle fish flakes on it, so remember the magic phrase, 'katsuo-bushi nashi!' ("without fish flakes") Okonomiyaki restaurants also have other side dishes like enoki mushrooms cooked in butter. Monja, the Tokyo equivalent of okonomiyaki is similar, but sticky and runny.
Noodles
Ramen, a Japanese version of Chinese noodles in soup, has recently become extremely popular in Japan. Unfortunately, ramen shops are never a possibility for vegetarians though because chicken/bones/meat/fish are always used to make the soup. Similarly, all Japanese instant ramen available in supermarkets contains animal products. However, you can buy fresh ramen noodles and make your own soup, and health food shops and international grocery stores often stock veg-friendly instant ramen. The other two kinds of noodle shops you'll see everywhere are udon (thick flat noodles) and soba (buckwheat noodles), but when served hot, the soup always contains fish or meat. Cold soba could be a possibility if you skipped the soba dipping sauce and used soy sauce instead. Of course, like ramen, you can easily make it yourself.
Search Japan Veg Guide for noodle restaurants.
Izakayas and bars
Izakayas are Japanese-style sit-down bars which serve various kinds of Japanese and Japanized food to share while drinking. If you look around, you should be able to find one which has a few veg options. You might be pushing it to have a complete meal though. Some izakaya standard dishes which might be ok for vegetarians include edamame (boiled young soybeans in the pod), yakko (cold tofu - ask for it without fish flakes), tsukemono (pickled vegetables), onigiri (rice balls - ask for ones with umeboshi (sour plum) or konbu (seaweed) inside) or yaki-onigiri (grilled rice balls), salads, and fried potatoes. Because izakayas serve such varied food, you might be lucky to find pizza, pasta, tofu dishes, okonomiyaki, grilled vegetables, rice and noodle dishes, and other things on the menu which may be edible. Other bars serve a similar range of snacks and small dishes. These are the best places to try sake or sho-chu. The small izakayas are the best for authenticity and atmosphere, and the staff will be more willing to try to cater for you. However, the big chains like Shirokiya, Watami, Wara-Wara, Doma Doma etc have picture menus.
Search Japan Veg Guide for izakayas and bars.
Yakiniku and sumibiyaki
Yakiniku is a cuisine that came from Korea. Although these are restaurants specialising in grilled meat, you can sometimes find ones with a surprising range of veg-friendly choices. You'll have to put up with the smell of burning flesh, and insist on a seperate grill than your meat-eating friends, as in these places you cook the food yourself. Check out the menus and sometimes you'll find vegetables to grill (usually mushrooms, capsicum/green pepper, onions and eggplant), plus side dishes like salads, kimchee, etc.
Search Japan Veg Guide for Korean restaurants.
Tofu restaurants
Although they sound promising, tofu restaurants mostly serve tofu dishes containing fish or meat! Most of them usually have a couple of items which are ok though, but tend to be expensive.
Search Japan Veg Guide for tofu restaurants.
Shojin-ryori
Shojin-Ryori is Buddhist vegetarian cuisine served at temples and special restaurants mainly in the Kyoto area. It's a very zen experience with beautifully presented and subtly-flavoured set meals. However, it's usually extremely expensive so not the kind of food you could eat regularly! There are only a couple of these restaurants in Tokyo.
Search Japan Veg Guide for Shojin-ryori restaurants.
Shabu-Shabu, Sukiyaki, Yakitori, Tonkatsu, Japanese curry, Gyudon, Oden, etc
It's usually not possible to find suitable food at these kinds of restaurants.
Search Japan Veg Guide for Japanese restaurants.
International restaurants
Indian
Indian restaurants are a Tokyo vegetarian's best friend. Luckily, there are many Indian and some South Asian (Bangladeshi, Pakistani, Nepalese, Tibetan, Sri Lankan) restaurants around Tokyo. These places always have vegetarian and sometimes vegan options, and the staff usually speak a bit of English. It's best to go at lunch time when most have lunch buffets or sets for around 1000yen. Whatever you do, don't confuse a Japanese curry restaurant for an Indian one. Japanese curry is not suitable for vegetarians!
Check out the Indian & South Asian Restaurants listed on Japan Veg Guide.
Italian
You won't have trouble finding Italian restaurants in Japan. If you can eat cheese, pizza is a good option as most places have a few meatless pizzas, or others that you can ask for without meat. There are usually meatless pasta dishes like tomato, arrabiata, pepperoncino etc. But sometimes they contain bacon for some reason, so ask for 'be-kon nashi.' A problem with pasta is that sometimes chicken or beef stock is used in the sauce, so it's good to ask, and avoid the soupy pasta dishes. Try to find the more authentic Italian restaurants for more vegetarian choices. Sometimes Japanese-style spaghetti (made with soy sauce, nori, shiso/mushrooms/spinach/kimchi/natto/etc) suitable for vegetarians can be found, but again check if they use fish or animal stock. Unless you can communicate well with the chef, vegan options can be limited in Italian restaurants.
Check out the Italian restaurants on Japan Veg Guide.
Chinese
Chinese restaurants might seem ok, but most have been Japanized and unless you find an authentic place where you can communicate well with the chef, they are best avoided. Generally all dishes contain seafood or meat, or at the very least, chicken stock.
There are some good vegetarian Chinese and Taiwanese restaurants in Tokyo, so search this site for recommended Chinese and Taiwanese restaurants in Tokyo.
Middle Eastern
If you're lucky, you might come across a Israeli, Turkish, Lebanese or other Middle-Eastern restaurant which has some vegetarian-friendly food. Unfortunately, most kebab vans you see around don't sell falafel!
Search Japan Veg Guide for Middle Eastern restaurants.
Mexican
There aren't that many Mexican restaurants in Japan, especially not authentic ones. Most of them have a few things suitable for vegetarians though, such as bean burritos or vegetable fajitas. There are some Tex-Mex, American, and Fusion restaurants around which serve Mexican food.
Search Japan Veg Guide for Mexican restaurants.
Other cuisines
There are a few Thai, Vietnamese, Indonesian, or other South-East Asian restaurants around but it can be a bit difficult to find veg food. Shrimp paste or fish sauce are often used. Korean can sometimes be an option if you could ask for bibimba without meat, grilled vegetables, or side dishes like kimchee. American restaurants and big chains sometimes have vegetarian options. British Pubs sometimes have vegetarian meals and pub snacks. African, South American, European and almost any kind of restaurant can be found in Tokyo, but vegetarian options are limited.
Check out the South-east Asian, African, Korean, French and American restaurants on Japan Veg Guide.
Fast Food
You won't find any vegetarian food in any of the US or Japanese hamburger chains except maybe fries (remember, McDonalds uses beef extract in their fries). One exception is Mosbuger. Last time I went, they had a kinpira-rice burger and a konyakku burger. They also cook their fries and onion rings in clean vegetable oil. Another Japanese chain, Freshness Burger, had two vegetarian (but not vegan) burgers on the menu - a tofu burger and a beans burger. Subway is also a good option as you can choose what they put in your sandwich.
Search Japan Veg Guide for burgers and sandwiches.
Pizza
If you can eat cheese, there are some pizza restaurants around which have some meatless pizzas. Italian restaurants always have some options. And there are lots of pizza delivery companies like Pizza Hut, Dominoes, Pizza-La etc. Pizza delivery is expensive in Japan though, so try to find smaller local pizza shops as they are cheaper and nicer. There should be a couple of meatless pizzas on the menu, or other pizzas that you can ask for without meat. You'll also find some strange but surprisingly nice items on pizzas, like corn, eggplant, potato, and fruit.
Search Japan Veg Guide for pizza restaurants.
Cafes
There are heaps of little cafes around as well as the omnipresent Starbucks, Doutour, Tully's, Excelsior, Veloce etc. They sometimes have sandwiches, muffins etc which are ok. Look for the more bohemian cafes or cafe/bars because they are more likely to have vegetarian options. A lot of Japanese cafes often serve light meals like spaghetti which are sometimes ok.
There are lots of great vegan, vegetarian and veg-friendly cafes in Tokyo so have a look at the recommended cafes listed on this site.
Family restaurants
You'll find Johnathon's, Denny's, Royal Host, Skylark, Gusto, BLDY, various other chains and small Western-style cafe-restaurants everywhere. These are places to go for drinks and desserts mainly because food for vegetarians is fairly limited. Chips, salad, and pasta can usually be found. Saizeriya is an Italian-style family restaurant which offers a few more veg options than the others.
Take-out food
CONVENIENCE STORES If you want something small to eat, then you can pop in at one of those ubiquitous convenience stores. They usually have a range of bentos and snack foods. For vegetarians though, it's limited to onigiri (umeboshi, konbu, sometimes there are other seaweed/pickle varieties), sometimes sandwiches, salads, pickles and bread products. Check the ingredients though. Of course there are also lots of snack foods and desserts which are ok.
SUPERMARKETS Supermarkets usually have some ready-to-eat food. You'll probably be able to find onigiri, sushi, tempura, salads, sandwiches, pre-cooked rice, pastry and bread products, fresh fruit, fried food and other items. Just wander around checking the ingredients. Supermarkets often even provide a microwave to heat things up.
DEPARTMENT STORES If you're near a major train station, head to the basement of a large department store such as Takashimaya, Mitsukoshi, Matsuya, Isetan, Tokyu etc. There will be lots of tiny food shops perfect for grabbing a ready-made meal. Look for the bakeries, onigiri, salad, tempura and tofu shops in particular.
BAKERIES For a bigger range of better quality bread and pastry products which taste much nicer and have less artificial and animal ingredients, avoid the convenience stores and supermarkets, and head straight to one of the small or European-style bakeries. Of course plain bread and sweet foods can be found, but also savoury bread products and sometimes sandwiches. A knowledge of katakana will help avoid unwanted ham surprises. Japanese style bread tends to be very soft, a bit sweet and almost always white. Japanese bread products sometimes contain shortening which could be made from animal fat.
BENTO SHOPS Bentos are ready-cooked or made-to-order meals available from bento shops like Hokka Hokka Tei, Origin Bento, and independent shops. Usually all bentos are not suitable for vegetarians, but these shops also often sell onigiri, salads, tofu and self-serve dishes which are sometimes ok for vegetarians.
SUSHI SHOPS OR DANGO SHOPS You can get inari, kappa-maki, kanpiyo-maki, natto-maki etc from small take-out sushi shops. Dango shops are small shops which sell Japanese sweets made from rice and beans. Often there is a small take-away counter which sells sweets as well as some kinds of sushi.
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